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Volume 31Issue 3
Jun. 2022
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Dianlong Yang, Xiaodan Jiang, Yijie Zhou, Xiaobin Dong, Luyao Liu, Lulu Zhang, Xianbo Qiu. A Microfluidic System with Active Mixing for Improved Real-Time Isothermal Amplification[J]. JOURNAL OF BEIJING INSTITUTE OF TECHNOLOGY, 2022, 31(3): 275-284. doi: 10.15918/j.jbit1004-0579.2022.026
Citation: Dianlong Yang, Xiaodan Jiang, Yijie Zhou, Xiaobin Dong, Luyao Liu, Lulu Zhang, Xianbo Qiu. A Microfluidic System with Active Mixing for Improved Real-Time Isothermal Amplification[J].JOURNAL OF BEIJING INSTITUTE OF TECHNOLOGY, 2022, 31(3): 275-284.doi:10.15918/j.jbit1004-0579.2022.026

A Microfluidic System with Active Mixing for Improved Real-Time Isothermal Amplification

doi:10.15918/j.jbit1004-0579.2022.026
Funds:This work was supported by the National Natural Science Foundation of China (Nos. 81871505, 61971026), the Fundamental Research Fund for the Central Universities (No. XK1802-4), the National Science and Technology Major Project (No. 2018ZX10732101-001-009), and the Research Fund to the Top Scientific and Technological Innovation Team from Beijing University of Chemical Technology (No. buctylkjcx06).
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  • Author Bio:

    Dianlong Yangis a graduate student in College of Information Science and Technology, Beijing University of Chemical Technology. He obtained his bachelor’s degree from Beijing University of Chemical Technology. His current research interests include biomedical instrumentation in point-of-care diagnosis and microfluidics

    Xiaodan Jiangis a graduate student in College of Information Science and Technology, Beijing University of Chemical Technology, China. She obtained her bachelor’s degree from Beijing University of Chemical Technology. Her current research interests include microfluidics and convection PCR

    Yijie Zhouis an undergraduate student in College of Information Science and Technology, Beijing University of Chemical Technology, China. His current research interests include biomedical instrumentation in point-of-care diagnosis and microfluidics

    Xiaobin Dongobtained his master’s degree from Shenzhen University in 2018. Currently, he is a Ph.D. student in College of Information Science and Technology, Beijing University of Chemical Technology. His research focuses on the microfluidics PCR and lab-on-a-disc microfluidics

    Luyao Liureceived M.S. degree in Mechanical and Aerospace Engineering from George Washington University in 2014. He is currently a Ph.D. candidate in College of Information Science and Technology, Beijing University of Chemical Technology. His main research interests are microfluidic and biomedical device

    Lulu Zhangreceived her Ph.D. in microelectronics and solid state electronics from University of Chinese Academy of Sciences in 2014, China. She was a visiting scholar in University of Pennsylvania from 2017 to 2018. She is an associate professor in Department of Measurement and Control in Beijing University of Chemical Technology, China. Her current research interests include biochemical sensors and microsystems, especially surface plasma resonance sensors and instruments

    Xianbo Qiureceived his Ph.D. in control theory and control engineering from Shanghai Jiaotong University in 2006, China. He was a postdoctor researcher in University of Pennsylvania from 2006 to 2011. He is a professor in Department of Automation in Beijing University of Chemical Technology, China. His current research interests include microfluidics, lab-on-chip system, and biomedical instrumentation in point-of-care diagnosis

  • Corresponding author:xbqiu@mail.buct.edu.cn
  • Received Date:2022-03-08
  • Rev Recd Date:2022-04-17
  • Accepted Date:2022-05-05
  • Publish Date:2022-06-28
  • To improve the performance of real-time recombinase polymerase amplification (RPA), a microfluidic system with active mixing is developed to optimize the reaction dynamics. Instead of adopting a single typical reaction chamber, a specific reactor including a relatively large chamber in center with two adjacent zig-zag channels at two sides is integrated into the microfluidic chip. Active mixing is achieved by driving the viscous reagent between the chamber and the channel back and forth periodically with an outside compact peristaltic pump. To avoid reagent evaporation, one end of the reactor is sealed with paraffin oil. A hand-held companion device is developed to facilitate real-time RPA amplification within 20 min. The whole area of the reactor is heated with a resistance heater to provide uniform reaction temperature. To achieve real-time monitoring, a compact fluorescence detection module is integrated into the hand-held device. A smartphone with custom application software is adopted to control the hand-held device and display the real-time fluorescence curves. The performances of two cases with and without active on-chip mixing are compared between each other by detecting African swine fever viruses. It has been demonstrated that, with active on-chip mixing, the amplification efficiency and detection sensitivity can be significantly improved.
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  • [1]
    X. Duan, L. Zhao, H. Dong, W. Zhao, S. Liu, and G. Sui, “Microfluidic immunoassay system for rapid detection and semi-quantitative determination of a potential serum biomarker mesothelin, ” ACS Sensors, vol. 4, no. 11, pp. 2952-2957, 2019.
    [2]
    A. Ganguli, A. Mostafa, J. Berger, M. Y. Aydin, F. Sun, and S. A. S. de Ramirez, “Rapid isothermal amplification and portable detection system for SARS-CoV-2, ” Proceedings of the National Academy of Sciences, vol. 117, no. 37, pp. 22727-22735, 2020.
    [3]
    J. Macdonald, F. Von Stetten, and J. Li, “ Review: A comprehensive summary of a decade development of the recombinase polymerase amplification, ” Analyst, vol. 144, no. 1, pp. 31-67, 2018.
    [4]
    L. Wang, C. Zhang, G. Chen, Y. Wang, and M. Fu, “Development of a rapid screening test for Karenia mikimotoi by using loop-mediated isothermal amplification and lateral flow dipstick, ” Journal of Applied Phycology, vol. 32, pp. 3143-3155, 2020.
    [5]
    H. Zhang, Y. Xu, Z. Fohlerova, H. Chang, C. Iliescu, and P. Neuzil. “LAMP-on-a-chip: Revising microfluidic platforms for loop-mediated DNA amplification, ” TrAC Trends in Analytical Chemistry, vol. 113, pp. 44-53, 2019.
    [6]
    F. Zheng, S. Li, S. Wang, T. Feng, Z. Jiang, and J. Pan, “Cross-priming isothermal amplification combined with nucleic acid test strips for detection of meat species, ” Analytical Biochemistry, vol. 597, pp. 113672, 2020.
    [7]
    M. Vincent, Y. Xu, and H. Kong, “Helicase-dependent isothermal DNA amplification, ” EMBO Reports, vol. 5, no. 8, pp. 795-800, 2004.
    [8]
    G. T. Walker, M. C. Little, J. G. Nadeau, and D. D. Shank, “Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system, ” Proceedings of the National Academy of Sciences, vol. 89, no. 1, pp. 392-396, 1992.
    [9]
    H. Sagcan and N. T. Kara, “Detection of potato ring rot pathogen clavibacter michiganensis subsp. sepedonicus by loop-mediated isothermal amplification (LAMP) assay, ” Scientific Reports, vol. 9, no. 1, pp. 1-8, 2019.
    [10]
    H. Van Nguyen, V. D. Nguyen, E. Y. Lee, and T. S. Seo, “Point-of-care genetic analysis for multiplex pathogenic bacteria on a fully integrated centrifugal microdevice with a large-volume sample, ” Biosensors and Bioelectronics, vol. 136, pp. 132-139, 2019.
    [11]
    W. Xing, Y. Liu, H. Wang, S. Li, Y. Lin, and L. Chen, “A high-throughput, multi-index isothermal amplification platform for rapid detection of 19 types of common respiratory viruses including SARS-CoV-2, ” Engineering, vol. 6, no. 10, pp. 1130-1140, 2020.
    [12]
    H. Kim, N. Abbas, and S. Shin, “A rapid diagnosis of SARS-CoV-2 using DNA hydrogel formation on microfluidic pores, ” Biosensors and Bioelectronics, vol. 177, pp. 113005, 2021.
    [13]
    G. Silva Nunes Bezerra, W. L. Barbosa Junior, A. Virgínia Batista Vieira, A. T. Xavier, M. Sebastião Da Costa Lima Júnior, and E. M. Xavier, “Loop-mediated isothermal amplification methods for diagnosis of visceral leishmaniasis (kala-azar): A systematic review, ” Expert Review of Molecular Diagnostics, vol. 20, no. 5, pp. 455-465, 2020.
    [14]
    J. Chen, Y. Xu, H. Yan, Y. Zhu, L. Wang, and Y. Zhang, “Sensitive and rapid detection of pathogenic bacteria from urine samples using multiplex recombinase polymerase amplification, ” Lab on a Chip, vol. 18, no. 16, pp. 2441-2452, 2018.
    [15]
    J. Song, C. Liu, M. G. Mauk, S. C. Rankin, J. B. Lok, and R. M. Greenberg, “Two-stage isothermal enzymatic amplification for concurrent multiplex molecular detection, ” Clinical Chemistry, vol. 63, no. 3, pp. 714-722, 2017.
    [16]
    M. El-Tholoth, H. H. Bau, and J. Song, “A single and two-stage, closed-tube, molecular test for the 2019 novel Coronavirus (COVID-19) at home, clinic, and points of entry, ” ChemRxiv[preprint], 2020.
    [17]
    M. Fu, G. Chen, C. Zhang, Y. Wang, R. Sun, and J. Zhou, “Rapid and sensitive detection method for Karlodinium veneficum by recombinase polymerase amplification coupled with lateral flow dipstick, ” Harmful Algae, vol. 84, pp. 1-9, 2019.
    [18]
    L. Lillis, J. Siverson, A. Lee, J. Cantera, M. Parker, O. Piepenburg, and D. S. Boyle, “Factors influencing recombinase polymerase amplification (RPA) assay outcomes at point of care, ” Molecular and Cellular Probes, vol. 30, no. 2, pp. 74-78, 2016.
    [19]
    S. Kalsi, M. Valiadi, M. N. Tsaloglou, L. Parry-Jones, A. Jacobs, R. Watson, and H. Morgan, “Rapid and sensitive detection of antibiotic resistance on a programmable digital microfluidic platform, ” Lab on a Chip, vol. 15, no. 14, pp. 3065-3075, 2015.
    [20]
    V. Mengeaud, J. Josserand, and H. Girault, “Mixing processes in a zigzag microchannel: Finite element simulations and optical study, ” Analytical Chemistry, vol. 74, no. 16, pp. 4279-4286, 2002.
    [21]
    C. Huang and C. Tsou, “The implementation of a thermal bubble actuated microfluidic chip with microvalve, micropump and micromixer, ” Sensors & Actuators A Physical, vol. 210, pp. 147-156, 2014.
    [22]
    H. Matusiewicz and M. Ślachciński, “Development of interface for online coupling of micro-fluidic chip-based photo-micro-reactor/ultrasonic nebulization with microwave induced plasma spectrometry and its application in simultaneous determination of inorganic trace elements in biological mate, ” Microchemical Journal, vol. 119, pp. 133-139, 2015.
    [23]
    A. Haghighinia and S. Movahedirad, “Experimental investigation and CFD simulation of cavity flow effects on liquids mixing in vortex-based microfluidic chips: Quantitative visualization and optimization by response surface method (RSM), ” Brazilian Journal of Chemical Engineering, vol. 38, no. 2, pp. 297-313, 2021.
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